STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_04825Uncharacterized protein. (166 aa)    
Predicted Functional Partners:
T459_24319
Zinc finger CCCH domain-containing protein 59.
   
 
 0.777
T459_32707
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 
 0.616
T459_30931
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1.
    
 
 0.616
T459_30930
Helicase ATP-binding domain-containing protein.
    
 
 0.616
T459_30933
HA2 domain-containing protein.
    
 
 0.616
T459_30935
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 
 0.616
T459_02737
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 
 0.567
T459_31988
Peptidylprolyl isomerase.
      
 0.542
T459_10912
Cytochrome c-type biogenesis protein.
      
 0.522
T459_07930
Uncharacterized protein.
   
  
 0.518
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.