STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_04895VQ domain-containing protein. (208 aa)    
Predicted Functional Partners:
T459_22318
Uncharacterized protein.
    
 0.722
T459_24617
Nuclear cap-binding protein subunit 1.
    
 0.679
T459_04121
Uncharacterized protein.
    
 0.671
T459_22093
Sigma factor binding protein 1, chloroplastic.
  
  
 0.628
T459_22993
Uncharacterized protein.
    
 0.617
T459_32636
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.614
T459_03019
VQ domain-containing protein.
  
   
 0.611
T459_26367
Small nuclear ribonucleoprotein F.
   
 0.590
T459_08276
Phytochrome A-associated F-box protein.
    
 0.534
T459_08330
Phytochrome A-associated F-box protein.
    
 0.534
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.