STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_00206BTB/POZ domain-containing protein POB1. (186 aa)    
Predicted Functional Partners:
T459_13963
RING-type domain-containing protein.
    
 0.596
T459_07468
Uncharacterized protein.
    
 0.596
T459_00334
Uncharacterized protein.
    
 0.596
T459_00753
Uncharacterized protein.
    
 0.596
T459_10117
Uncharacterized protein.
    
 0.585
T459_32865
Uncharacterized protein.
    
 0.585
T459_27866
Transcription factor bHLH80.
  
 
  0.530
T459_24383
E3 ubiquitin-protein ligase RBX1.
    
 0.525
T459_08163
E3 ubiquitin-protein ligase RBX1.
    
 0.525
T459_22164
ANK_REP_REGION domain-containing protein.
    
 0.513
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.