STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_01194Uncharacterized protein. (101 aa)    
Predicted Functional Partners:
T459_12112
Nuclear pore complex protein NUP54.
   
 0.788
T459_27486
Nuclear pore complex protein NUP88.
    
 0.764
T459_03930
Uncharacterized protein.
   
 0.762
T459_25233
Uncharacterized protein.
   
 0.708
T459_24420
Nuclear pore complex protein.
   
 0.708
T459_21524
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.696
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
   
 0.696
T459_05723
C2H2-type domain-containing protein.
   
 0.677
T459_20718
C2H2-type domain-containing protein.
   
 0.677
T459_35512
Uncharacterized protein.
   
 0.640
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.