Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T459_02457Proline-rich receptor-like protein kinase PERK9. (763 aa)    
Predicted Functional Partners:
T459_22295
Uncharacterized protein.
      
 0.672
SGT1
Protein SGT1-like protein.
    
 0.580
T459_13498
RING-type E3 ubiquitin transferase.
    
 
 0.578
T459_02718
Uncharacterized protein.
    
 
 0.578
Sgt1b
Protein SGT1-like protein A.
    
 0.565
T459_17754
Uncharacterized protein.
    
 0.563
T459_17647
Uncharacterized protein.
      
 0.554
T459_06864
Protease Do-like 1, chloroplastic.
      
 0.554
GRP1
Glycine-rich RNA-binding protein 1-3.
    
 0.488
T459_22002
RING-type E3 ubiquitin transferase.
    
 
 0.486
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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