STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_03049ChSh domain-containing protein. (170 aa)    
Predicted Functional Partners:
T459_33866
Histone-binding protein RBBP4.
   
 0.616
T459_06646
Uncharacterized protein.
    
 0.593
T459_29496
Chromatin assembly factor 1 subunit FAS1.
   
 
 0.585
T459_28866
Uncharacterized protein.
      
 0.550
T459_25592
Uncharacterized protein.
      
 0.480
T459_20755
Uncharacterized protein.
    
 0.478
T459_13360
Protein BASIC PENTACYSTEINE6.
    
 
 0.457
T459_14455
Putative lysine-specific demethylase ELF6.
    
 
 0.451
T459_35183
Uncharacterized protein.
    
 0.440
T459_28406
Uncharacterized protein.
    
 0.440
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.