STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_03048Uncharacterized protein. (272 aa)    
Predicted Functional Partners:
T459_06646
Uncharacterized protein.
    
 0.593
T459_29496
Chromatin assembly factor 1 subunit FAS1.
   
 
 0.509
T459_35183
Uncharacterized protein.
    
 0.440
T459_28406
Uncharacterized protein.
    
 0.440
T459_07902
Uncharacterized protein.
    
 0.440
T459_32774
Transcription factor-like protein DPB; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.
   
 0.416
T459_22935
Transcription factor-like protein DPA.
   
 0.416
T459_34128
Transcription factor E2FB.
   
 0.400
T459_28104
Chromatin structure-remodeling complex protein SYD.
    
 0.400
T459_28565
Transcription factor E2FB.
   
 0.400
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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