STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS52190.1cation:H+ antiporter. (336 aa)    
Predicted Functional Partners:
SIS52206.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.876
SIS52177.1
Serine protease SohB.
       0.708
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
    0.643
SIS69144.1
Sodium/proton antiporter, CPA1 family.
 
 
 
 0.588
SIS67710.1
Di-and tricarboxylate transporter.
 
    0.537
SIS66734.1
Hypothetical protein.
   
    0.495
SIS55296.1
Multisubunit potassium/proton antiporter, PhaA subunit /multisubunit potassium/proton antiporter, PhaB subunit.
     
 0.428
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.424
SIS79652.1
Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains.
 
     0.408
Your Current Organism:
Rhodobacter vinaykumarii
NCBI taxonomy Id: 407234
Other names: CCUG 54311, DSM 18714, JCM 14544, R. vinaykumarii, Rhodobacter vinaykumarii Srinivas et al. 2007, strain JA123
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