Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS53055.1 | SIS54079.1 | SAMN05421795_101352 | SAMN05421795_101426 | Hydroxymethylpyrimidine kinase. | Thiamine diphosphokinase. | 0.619 |
SIS53055.1 | SIS64744.1 | SAMN05421795_101352 | SAMN05421795_102138 | Hydroxymethylpyrimidine kinase. | Hypothetical protein. | 0.562 |
SIS53055.1 | SIS68275.1 | SAMN05421795_101352 | SAMN05421795_102496 | Hydroxymethylpyrimidine kinase. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.719 |
SIS53055.1 | SIS79935.1 | SAMN05421795_101352 | SAMN05421795_10559 | Hydroxymethylpyrimidine kinase. | Thiamine-phosphate pyrophosphorylase. | 0.988 |
SIS53055.1 | SIS87591.1 | SAMN05421795_101352 | SAMN05421795_108124 | Hydroxymethylpyrimidine kinase. | Glutamate synthase (NADPH) large subunit. | 0.499 |
SIS53055.1 | SIS89899.1 | SAMN05421795_101352 | SAMN05421795_11045 | Hydroxymethylpyrimidine kinase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.518 |
SIS53055.1 | pdxH | SAMN05421795_101352 | SAMN05421795_10769 | Hydroxymethylpyrimidine kinase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.526 |
SIS53055.1 | thiE | SAMN05421795_101352 | SAMN05421795_101351 | Hydroxymethylpyrimidine kinase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
SIS53055.1 | thiM | SAMN05421795_101352 | SAMN05421795_101350 | Hydroxymethylpyrimidine kinase. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.999 |
SIS53055.1 | truA | SAMN05421795_101352 | SAMN05421795_102402 | Hydroxymethylpyrimidine kinase. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.543 |
SIS54079.1 | SIS53055.1 | SAMN05421795_101426 | SAMN05421795_101352 | Thiamine diphosphokinase. | Hydroxymethylpyrimidine kinase. | 0.619 |
SIS64744.1 | SIS53055.1 | SAMN05421795_102138 | SAMN05421795_101352 | Hypothetical protein. | Hydroxymethylpyrimidine kinase. | 0.562 |
SIS64744.1 | SIS79935.1 | SAMN05421795_102138 | SAMN05421795_10559 | Hypothetical protein. | Thiamine-phosphate pyrophosphorylase. | 0.528 |
SIS64744.1 | thiE | SAMN05421795_102138 | SAMN05421795_101351 | Hypothetical protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.528 |
SIS68275.1 | SIS53055.1 | SAMN05421795_102496 | SAMN05421795_101352 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Hydroxymethylpyrimidine kinase. | 0.719 |
SIS68275.1 | SIS79935.1 | SAMN05421795_102496 | SAMN05421795_10559 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Thiamine-phosphate pyrophosphorylase. | 0.551 |
SIS68275.1 | thiE | SAMN05421795_102496 | SAMN05421795_101351 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.764 |
SIS79935.1 | SIS53055.1 | SAMN05421795_10559 | SAMN05421795_101352 | Thiamine-phosphate pyrophosphorylase. | Hydroxymethylpyrimidine kinase. | 0.988 |
SIS79935.1 | SIS64744.1 | SAMN05421795_10559 | SAMN05421795_102138 | Thiamine-phosphate pyrophosphorylase. | Hypothetical protein. | 0.528 |
SIS79935.1 | SIS68275.1 | SAMN05421795_10559 | SAMN05421795_102496 | Thiamine-phosphate pyrophosphorylase. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.551 |
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