STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS57422.1Hypothetical protein. (555 aa)    
Predicted Functional Partners:
SIS57449.1
Hypothetical protein.
 
     0.901
SIS63747.1
Outer membrane protein OmpU.
    
 
 0.692
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.685
SIS63908.1
TIGR02302 family protein.
  
 
 0.565
SIS52144.1
OmpA-OmpF porin, OOP family.
  
 0.563
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.563
SIS57526.1
OmpA-OmpF porin, OOP family.
  
 0.563
SIS58257.1
Outer membrane protein OmpA.
  
 0.563
SIS67926.1
OmpA family protein.
  
 0.563
SIS80222.1
Outer membrane protein OmpA.
  
 0.563
Your Current Organism:
Rhodobacter vinaykumarii
NCBI taxonomy Id: 407234
Other names: CCUG 54311, DSM 18714, JCM 14544, R. vinaykumarii, Rhodobacter vinaykumarii Srinivas et al. 2007, strain JA123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.