Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS63886.1 | SIS63908.1 | SAMN05421795_10256 | SAMN05421795_10258 | Protein of unknown function. | TIGR02302 family protein. | 0.750 |
SIS63886.1 | argH | SAMN05421795_10256 | SAMN05421795_10254 | Protein of unknown function. | Argininosuccinate lyase. | 0.727 |
SIS63886.1 | lysA | SAMN05421795_10256 | SAMN05421795_10257 | Protein of unknown function. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.773 |
SIS63908.1 | SIS63886.1 | SAMN05421795_10258 | SAMN05421795_10256 | TIGR02302 family protein. | Protein of unknown function. | 0.750 |
SIS63908.1 | argH | SAMN05421795_10258 | SAMN05421795_10254 | TIGR02302 family protein. | Argininosuccinate lyase. | 0.652 |
SIS63908.1 | lysA | SAMN05421795_10258 | SAMN05421795_10257 | TIGR02302 family protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.851 |
SIS68782.1 | SIS87081.1 | SAMN05421795_102552 | SAMN05421795_10870 | Carboxynorspermidine dehydrogenase. | Saccharopine dehydrogenase (NAD+, L-lysine-forming). | 0.859 |
SIS68782.1 | dapF | SAMN05421795_102552 | SAMN05421795_102107 | Carboxynorspermidine dehydrogenase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.475 |
SIS68782.1 | lysA | SAMN05421795_102552 | SAMN05421795_10257 | Carboxynorspermidine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.870 |
SIS68782.1 | murE | SAMN05421795_102552 | SAMN05421795_101321 | Carboxynorspermidine dehydrogenase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.529 |
SIS87081.1 | SIS68782.1 | SAMN05421795_10870 | SAMN05421795_102552 | Saccharopine dehydrogenase (NAD+, L-lysine-forming). | Carboxynorspermidine dehydrogenase. | 0.859 |
SIS87081.1 | lysA | SAMN05421795_10870 | SAMN05421795_10257 | Saccharopine dehydrogenase (NAD+, L-lysine-forming). | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.851 |
SIS89651.1 | argH | SAMN05421795_11015 | SAMN05421795_10254 | Aspartate kinase; Belongs to the aspartokinase family. | Argininosuccinate lyase. | 0.422 |
SIS89651.1 | dapA | SAMN05421795_11015 | SAMN05421795_104144 | Aspartate kinase; Belongs to the aspartokinase family. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.750 |
SIS89651.1 | dapB | SAMN05421795_11015 | SAMN05421795_102339 | Aspartate kinase; Belongs to the aspartokinase family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.866 |
SIS89651.1 | dapF | SAMN05421795_11015 | SAMN05421795_102107 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.678 |
SIS89651.1 | lysA | SAMN05421795_11015 | SAMN05421795_10257 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.908 |
SIS89651.1 | murE | SAMN05421795_11015 | SAMN05421795_101321 | Aspartate kinase; Belongs to the aspartokinase family. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.562 |
argH | SIS63886.1 | SAMN05421795_10254 | SAMN05421795_10256 | Argininosuccinate lyase. | Protein of unknown function. | 0.727 |
argH | SIS63908.1 | SAMN05421795_10254 | SAMN05421795_10258 | Argininosuccinate lyase. | TIGR02302 family protein. | 0.652 |
page 1 of 3