STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS73361.1Disulfide bond formation protein DsbB. (172 aa)    
Predicted Functional Partners:
SIS73349.1
Membrane protein YqaA, SNARE-associated domain.
       0.876
SIS74797.1
Hypothetical protein.
 
     0.598
SIS84372.1
Hypothetical protein.
  
     0.565
SIS77187.1
Hypothetical protein.
  
     0.555
SIS67273.1
Protein-disulfide isomerase.
 
 
 0.550
SIS77467.1
Antitoxin CptB.
  
     0.540
SIS67564.1
SH3-like domain-containing protein.
  
     0.525
SIS87335.1
Hypothetical protein.
  
     0.505
SIS84461.1
Histidine phosphotransferase ChpT.
  
     0.502
SIS58046.1
Tim44-like domain-containing protein.
  
     0.491
Your Current Organism:
Rhodobacter vinaykumarii
NCBI taxonomy Id: 407234
Other names: CCUG 54311, DSM 18714, JCM 14544, R. vinaykumarii, Rhodobacter vinaykumarii Srinivas et al. 2007, strain JA123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.