STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS76696.1Transcriptional regulator, XRE family. (86 aa)    
Predicted Functional Partners:
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.792
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.727
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.678
SIS76704.1
Sulfate permease, SulP family.
 
     0.641
SIS76718.1
Winged helix-turn-helix DNA-binding.
       0.561
SIS76685.1
Hypothetical protein.
       0.543
SIS58823.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
  
  0.528
SIS65375.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
     
 0.518
SIS68828.1
O-acetylhomoserine sulfhydrylase.
    
 0.512
SIS76662.1
Hypothetical protein.
       0.497
Your Current Organism:
Rhodobacter vinaykumarii
NCBI taxonomy Id: 407234
Other names: CCUG 54311, DSM 18714, JCM 14544, R. vinaykumarii, Rhodobacter vinaykumarii Srinivas et al. 2007, strain JA123
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