STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS85655.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein. (346 aa)    
Predicted Functional Partners:
SIS85636.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.989
SIS85648.1
TRAP transporter, DctM subunit.
 
 
  0.989
SIS85663.1
L-glutamine synthetase.
 
     0.845
SIS85629.1
Predicted N-formylglutamate amidohydrolase.
 
     0.827
SIS85672.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
 
     0.811
SIS85621.1
Transcriptional regulator, RpiR family.
 
     0.805
SIS85682.1
Hypothetical protein.
 
    0.768
Your Current Organism:
Rhodobacter vinaykumarii
NCBI taxonomy Id: 407234
Other names: CCUG 54311, DSM 18714, JCM 14544, R. vinaykumarii, Rhodobacter vinaykumarii Srinivas et al. 2007, strain JA123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.