Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
THII_0028Glycosyl transferase. (281 aa)    
Predicted Functional Partners:
THII_1139
Hypothetical protein.
  
     0.582
pheS
phenylalanyl-tRNA synthetase, alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
     0.555
THII_0030
Sel1 domain-containing protein.
  
   0.488
THII_1539
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.457
THII_2638
Glycosyl transferase family protein.
 
     0.454
THII_0185
Glycosyl transferase, family 2.
 
     0.448
THII_1912
Glycosyltransferase.
 
   
 0.440
THII_2414
Hypothetical protein.
 
 
    0.424
THII_0716
Putative glycosyltransferase.
    
0.409
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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