Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
THII_0031 | THII_1887 | THII_0031 | THII_1887 | Prephenate dehydrogenase. | Molybdopterin-guanine dinucleotide biosynthesis protein B. | 0.695 |
THII_0031 | THII_3387 | THII_0031 | THII_3387 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.982 |
THII_0031 | THII_3762 | THII_0031 | THII_3762 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.910 |
THII_0031 | aroA | THII_0031 | THII_0032 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.990 |
THII_0031 | aroB | THII_0031 | THII_3421 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.734 |
THII_0031 | aroC | THII_0031 | THII_3864 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.825 |
THII_0031 | cmk | THII_0031 | THII_0034 | Prephenate dehydrogenase. | Cytidylate kinase. | 0.950 |
THII_0031 | hisC | THII_0031 | THII_1832 | Prephenate dehydrogenase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.970 |
THII_0031 | hisC-2 | THII_0031 | THII_3386 | Prephenate dehydrogenase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.993 |
THII_0031 | trpA | THII_0031 | THII_2959 | Prephenate dehydrogenase. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.681 |
THII_1887 | THII_0031 | THII_1887 | THII_0031 | Molybdopterin-guanine dinucleotide biosynthesis protein B. | Prephenate dehydrogenase. | 0.695 |
THII_3387 | THII_0031 | THII_3387 | THII_0031 | Prephenate dehydratase. | Prephenate dehydrogenase. | 0.982 |
THII_3387 | THII_3762 | THII_3387 | THII_3762 | Prephenate dehydratase. | Aspartate aminotransferase. | 0.992 |
THII_3387 | aroA | THII_3387 | THII_0032 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.925 |
THII_3387 | aroB | THII_3387 | THII_3421 | Prephenate dehydratase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.654 |
THII_3387 | aroC | THII_3387 | THII_3864 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.986 |
THII_3387 | cmk | THII_3387 | THII_0034 | Prephenate dehydratase. | Cytidylate kinase. | 0.677 |
THII_3387 | hisC | THII_3387 | THII_1832 | Prephenate dehydratase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.952 |
THII_3387 | hisC-2 | THII_3387 | THII_3386 | Prephenate dehydratase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.984 |
THII_3387 | trpA | THII_3387 | THII_2959 | Prephenate dehydratase. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.601 |
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