Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0049Secretion protein HlyD. (429 aa)    
Predicted Functional Partners:
THII_1605
ABC transporter.
 
 0.987
THII_2356
Outer membrane efflux protein.
 
 
 0.944
THII_1098
ABC transporter ATP-binding protein.
  
 
 0.878
THII_2173
Type I secretion outer membrane protein, TolC.
 
 
 0.860
THII_1552
Hypothetical protein.
 
  
 0.811
THII_0050
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.710
THII_3114
Hypothetical protein.
  
  
 0.699
THII_0051
Multi-sensor hybrid histidine kinase.
     
 0.683
THII_2779
Hypothetical protein.
  
 
 0.603
THII_0047
Heme biosynthesis protein HemY.
       0.541
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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