Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0061Hypothetical protein. (430 aa)    
Predicted Functional Partners:
THII_0636
Signal transduction histidine kinase.
 
 
 0.919
THII_0331
PAS domain S-box.
 
 
 0.909
THII_2440
Multi-sensor hybrid histidine kinase.
  
 
 0.888
THII_2168
Signal transduction histidine kinase.
  
 
 0.859
THII_0268
Histidine kinase.
 
 
 0.841
THII_0555
Response regulator receiver protein.
  
   0.774
THII_3902
Response regulator receiver protein.
  
   0.772
THII_0878
Response regulator receiver.
  
    0.770
THII_2528
Signal transduction histidine kinase.
 
 
 0.763
THII_2085
Chemotaxis protein CheY.
 
   0.762
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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