Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_0182Glycosyl transferase, group 2 family protein. (300 aa)    
Predicted Functional Partners:
THII_3152
NAD-dependent epimerase/dehydratase.
 
     0.891
THII_0183
Hypothetical protein.
       0.773
THII_1139
Hypothetical protein.
 
     0.648
glk
Glucokinase; Belongs to the bacterial glucokinase family.
       0.645
THII_1866
ABC-transporter protein.
 
  
 0.606
THII_1273
RmlD substrate binding domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.577
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.575
THII_0185
Glycosyl transferase, family 2.
 
    
0.564
THII_1140
Glycosyltransferase.
 
    0.537
THII_0213
ABC transporter ATP-binding protein.
 
  
 0.504
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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