Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0233FAD dependent oxidoreductase. (431 aa)    
Predicted Functional Partners:
THII_0231
MarR family transcriptional regulator.
       0.773
THII_0232
Hypothetical protein.
       0.773
THII_1691
Flavoprotein subunit of flavocytochrome c sulfide dehydrogenase.
   
 
 0.684
THII_0234
Aminotransferase, class III.
     
 0.682
gcvT
Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.675
THII_0230
Cytochrome P450.
   
 
 0.579
THII_1154
FAD dependent oxidoreductase.
 
   
 0.478
THII_1914
Deacetylase.
  
 
   0.431
THII_3728
Glutamate synthase.
  
  
 0.425
THII_0257
Glutamine synthetase, type I.
  
  
 0.424
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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