STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_0253Hypothetical protein. (217 aa)    
Predicted Functional Partners:
THII_0252
2Fe-2S ferredoxin.
       0.793
THII_0254
Hypothetical protein.
       0.678
THII_0255
Type II secretory pathway, component PulK.
       0.539
THII_3463
tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.501
THII_0041
TPR repeat-containing protein.
  
    0.447
rpoZ
RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   
 0.420
THII_3857
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.413
THII_0250
Hypothetical protein; Belongs to the UPF0149 family.
       0.400
THII_0251
Peptidase M24, catalytic core; Belongs to the peptidase M24B family.
       0.400
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.