THII_0255 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_0255

Type II secretory pathway, component PulK. (309 aa)

Predicted Functional Partners:

THII_1471

0.996

THII_2481

0.995

THII_1272

0.913

THII_1043

0.900

THII_3398

0.878

THII_2843

0.854

THII_0590

0.828

THII_2700

0.823

THII_2716

0.814

THII_3894

0.803

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0255	THII_0590	Type II secretory pathway, component PulK.	General secretion pathway protein C.	0.828
THII_0255	THII_1043	Type II secretory pathway, component PulK.	Hypothetical protein.	0.900
THII_0255	THII_1272	Type II secretory pathway, component PulK.	General secretory pathway protein K.	0.913
THII_0255	THII_1471	Type II secretory pathway, component PulK.	General secretion pathway protein J.	0.996
THII_0255	THII_2481	Type II secretory pathway, component PulK.	General secretion pathway protein I.	0.995
THII_0255	THII_2700	Type II secretory pathway, component PulK.	Bacterial type II secretion system protein.	0.823
THII_0255	THII_2716	Type II secretory pathway, component PulK.	General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.814
THII_0255	THII_2843	Type II secretory pathway, component PulK.	General secretion pathway protein G.	0.854
THII_0255	THII_3398	Type II secretory pathway, component PulK.	General secretion pathway protein H.	0.878
THII_0255	THII_3894	Type II secretory pathway, component PulK.	Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.803
THII_0590	THII_0255	General secretion pathway protein C.	Type II secretory pathway, component PulK.	0.828
THII_0590	THII_1471	General secretion pathway protein C.	General secretion pathway protein J.	0.864
THII_0590	THII_2481	General secretion pathway protein C.	General secretion pathway protein I.	0.882
THII_0590	THII_2716	General secretion pathway protein C.	General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.812
THII_0590	THII_2843	General secretion pathway protein C.	General secretion pathway protein G.	0.628
THII_0590	THII_3398	General secretion pathway protein C.	General secretion pathway protein H.	0.823
THII_0590	THII_3894	General secretion pathway protein C.	Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.842
THII_1043	THII_0255	Hypothetical protein.	Type II secretory pathway, component PulK.	0.900
THII_1043	THII_1272	Hypothetical protein.	General secretory pathway protein K.	0.900
THII_1043	THII_1471	Hypothetical protein.	General secretion pathway protein J.	0.640