Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0338Iron-sulfur cluster-binding protein. (323 aa)    
Predicted Functional Partners:
THII_0339
Von Willebrand factor type A.
 
    0.932
THII_0335
Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.881
THII_0334
Nitric-oxide reductase.
 
  
 0.811
THII_1616
Cytochrome c oxidase cbb3-type, subunit II.
  
  
 0.796
THII_1618
Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
  
 0.795
THII_0337
Hypothetical protein.
       0.783
THII_0336
ATPase AAA.
  
    0.779
THII_1767
Hypothetical protein.
 
  
 0.772
THII_1615
Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.690
THII_1769
Hypothetical protein.
 
     0.686
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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