Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_0353N-carbamoylputrescine amidase. (291 aa)    
Predicted Functional Partners:
THII_0351
Peptidylarginine deiminase; Belongs to the agmatine deiminase family.
 
 0.999
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
 
 0.957
THII_3051
Putative spermidine synthase with an N-terminal membrane domain.
  
 
 0.922
THII_0352
Restriction endonuclease.
       0.714
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.522
THII_0350
Multi-sensor hybrid histidine kinase.
       0.464
THII_0354
Two-component hybrid sensor and regulator.
       0.440
THII_1200
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
   
0.425
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
   
  
 0.416
THII_1691
Flavoprotein subunit of flavocytochrome c sulfide dehydrogenase.
   
    0.415
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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