Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_0446Glycosyl transferase, family 2. (237 aa)    
Predicted Functional Partners:
THII_2077
Glycosyl transferase family 1.
 
    0.973
THII_0447
Hypothetical protein.
 
     0.953
THII_0738
Group 2 glycosyl transferase.
  
     0.701
THII_0081
Dolichyl-phosphate beta-D-mannosyltransferase.
  
     0.665
THII_2979
Glycosyl transferase, group 1.
  
    0.652
THII_1935
Putative glycosyltransferase.
 
  
 0.542
rpoH
RNA polymerase sigma 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.509
THII_0448
Sulfate permease family protein.
       0.497
THII_1867
Tetratricopeptide repeat protein.
  
 
   0.472
THII_1227
Membrane protein.
  
  
 0.450
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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