THII_0448 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_0448

Sulfate permease family protein. (588 aa)

Predicted Functional Partners:

THII_2208

0.983

THII_0852

0.943

THII_2061

0.914

THII_2946

0.783

THII_1693

0.756

THII_3678

0.756

THII_0446

0.497

THII_0447

0.497

THII_3625

0.495

THII_2136

0.467

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0446	THII_0447	Glycosyl transferase, family 2.	Hypothetical protein.	0.949
THII_0446	THII_0448	Glycosyl transferase, family 2.	Sulfate permease family protein.	0.497
THII_0447	THII_0446	Hypothetical protein.	Glycosyl transferase, family 2.	0.949
THII_0447	THII_0448	Hypothetical protein.	Sulfate permease family protein.	0.497
THII_0448	THII_0446	Sulfate permease family protein.	Glycosyl transferase, family 2.	0.497
THII_0448	THII_0447	Sulfate permease family protein.	Hypothetical protein.	0.497
THII_0448	THII_0852	Sulfate permease family protein.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.943
THII_0448	THII_1693	Sulfate permease family protein.	Ankyrin.	0.756
THII_0448	THII_2061	Sulfate permease family protein.	Metallophosphoesterase.	0.914
THII_0448	THII_2136	Sulfate permease family protein.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.467
THII_0448	THII_2208	Sulfate permease family protein.	Polyketide synthase.	0.983
THII_0448	THII_2946	Sulfate permease family protein.	NADH-quinone oxidoreductase subunit M.	0.783
THII_0448	THII_3625	Sulfate permease family protein.	Sulfur deprivation response regulator.	0.495
THII_0448	THII_3678	Sulfate permease family protein.	Ankyrin.	0.756
THII_0852	THII_0448	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Sulfate permease family protein.	0.943
THII_0852	THII_1693	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ankyrin.	0.712
THII_0852	THII_2061	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Metallophosphoesterase.	0.694
THII_0852	THII_2208	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Polyketide synthase.	0.983
THII_0852	THII_2946	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-quinone oxidoreductase subunit M.	0.998
THII_0852	THII_3678	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ankyrin.	0.712