Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0452Hypothetical protein. (533 aa)    
Predicted Functional Partners:
THII_1202
Hypothetical protein.
     0.926
THII_0030
Sel1 domain-containing protein.
      0.693
THII_0074
TPR repeat-containing protein.
      0.621
THII_0453
Hypothetical protein.
 
     0.599
THII_0454
Hypothetical protein.
       0.507
THII_0455
DNA polymerase subunit beta.
       0.507
THII_0964
TPR repeat containing protein.
 
     0.473
THII_0013
Hypothetical protein.
  
   
 0.419
THII_2778
WD40 repeat-containing protein, subgroup.
 
   
 0.412
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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