Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_0511Na-Ca exchanger/integrin-beta4. (1394 aa)    
Predicted Functional Partners:
THII_3283
PDK repeat-containing protein.
  
     0.741
THII_1496
NB-ARC domain-containing protein.
  
     0.734
THII_1194
Hypothetical protein.
  
     0.730
THII_0190
Apoptotic protease activating factor 1.
  
     0.723
THII_0415
Hypothetical protein.
  
     0.721
THII_2524
Sulfotransferase family protein.
  
     0.705
THII_3847
ATPase.
  
     0.687
THII_2968
PAS domain S-box.
  
     0.685
THII_0745
Hypothetical protein.
 
     0.665
THII_2510
Membrane protease subunit, stomatin/prohibitin.
  
     0.658
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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