Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0651TonB family protein. (305 aa)    
Predicted Functional Partners:
THII_1429
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.921
THII_1428
Biopolymer transport protein ExbD/TolR family.
 
 
 0.878
THII_1601
Hypothetical protein.
  
    0.768
THII_1033
Hypothetical protein.
  
     0.708
THII_1282
Chemotaxis-related protein.
 
     0.694
THII_0648
Uracil phosphoribosyltransferase.
 
     0.685
THII_1284
Hypothetical protein.
  
     0.675
THII_0650
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
     
 0.670
THII_0849
Hypothetical protein.
  
     0.652
THII_0646
Dihydroorotase.
 
     0.648
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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