Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
THII_0674AMP-dependent synthetase/ligase. (526 aa)    
Predicted Functional Partners:
THII_2208
Polyketide synthase.
 0.990
THII_2201
FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.979
THII_2782
Polyketide synthase.
 
 0.928
THII_3583
3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.902
THII_3586
Malonyl CoA-ACP transacylase.
    
 0.846
THII_0012
Polyketide synthase family protein.
 0.844
hemL
Glutamate-1-semialdehyde aminotransferase.
 
  
 0.838
THII_0675
GNAT family acetyltransferase.
       0.773
THII_0677
Orn/DAP/Arg decarboxylase 2.
  
 0.755
THII_1050
Amino acid adenylation enzyme/thioester reductase family protein.
 
 
0.755
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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