THII_0681 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

THII_0681

Binding-protein-dependent transporters inner membrane component. (268 aa)

Predicted Functional Partners:

THII_0682

0.999

THII_2692

0.998

THII_3910

0.984

THII_0487

0.901

THII_1898

0.869

THII_1392

0.812

lgt

0.773

cysA

0.700

THII_3113

0.667

THII_3173

0.601

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_0487	THII_0681	THII_0487	THII_0681	ABC transporter.	Binding-protein-dependent transporters inner membrane component.	0.901
THII_0681	THII_0487	THII_0681	THII_0487	Binding-protein-dependent transporters inner membrane component.	ABC transporter.	0.901
THII_0681	THII_0682	THII_0681	THII_0682	Binding-protein-dependent transporters inner membrane component.	Glutathione ABC transporter permease.	0.999
THII_0681	THII_1392	THII_0681	THII_1392	Binding-protein-dependent transporters inner membrane component.	ABC transporter permease.	0.812
THII_0681	THII_1898	THII_0681	THII_1898	Binding-protein-dependent transporters inner membrane component.	Glycine betaine/L-proline ABC transporter ATPase.	0.869
THII_0681	THII_2692	THII_0681	THII_2692	Binding-protein-dependent transporters inner membrane component.	Peptide ABC transporter substrate-binding protein.	0.998
THII_0681	THII_3113	THII_0681	THII_3113	Binding-protein-dependent transporters inner membrane component.	ABC transporter.	0.667
THII_0681	THII_3173	THII_0681	THII_3173	Binding-protein-dependent transporters inner membrane component.	Iron ABC transporter ATP-binding protein.	0.601
THII_0681	THII_3910	THII_0681	THII_3910	Binding-protein-dependent transporters inner membrane component.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.984
THII_0681	cysA	THII_0681	THII_2605	Binding-protein-dependent transporters inner membrane component.	Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.700
THII_0681	lgt	THII_0681	THII_0683	Binding-protein-dependent transporters inner membrane component.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.773
THII_0682	THII_0681	THII_0682	THII_0681	Glutathione ABC transporter permease.	Binding-protein-dependent transporters inner membrane component.	0.999
THII_0682	THII_2692	THII_0682	THII_2692	Glutathione ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.999
THII_0682	THII_3910	THII_0682	THII_3910	Glutathione ABC transporter permease.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.981
THII_0682	lgt	THII_0682	THII_0683	Glutathione ABC transporter permease.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.773
THII_1392	THII_0681	THII_1392	THII_0681	ABC transporter permease.	Binding-protein-dependent transporters inner membrane component.	0.812
THII_1392	THII_2692	THII_1392	THII_2692	ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.460
THII_1392	THII_3910	THII_1392	THII_3910	ABC transporter permease.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.901
THII_1898	THII_0681	THII_1898	THII_0681	Glycine betaine/L-proline ABC transporter ATPase.	Binding-protein-dependent transporters inner membrane component.	0.869
THII_2692	THII_0681	THII_2692	THII_0681	Peptide ABC transporter substrate-binding protein.	Binding-protein-dependent transporters inner membrane component.	0.998