STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_0705O-linked N-acetylglucosamine transferase, SPINDLY family. (715 aa)    
Predicted Functional Partners:
THII_0706
Hypothetical protein.
       0.565
THII_1867
Tetratricopeptide repeat protein.
 
 
 0.539
THII_0364
Glycosyltransferase.
     0.531
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
       0.528
THII_0276
Clostripain.
  
  
 0.515
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.511
THII_1820
Calmodulin.
  
     0.496
THII_2080
TPR repeat containing protein.
 
 
0.475
THII_1951
GAF sensor hybrid histidine kinase.
  
  
 0.449
THII_0953
TPR repeat-containing protein.
 
    
0.431
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.