Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
THII_0799Protein involved in polysaccharide export. (425 aa)    
Predicted Functional Partners:
THII_0798
Capsular exopolysaccharide biosynthesis protein.
 
 
 0.997
THII_1327
Chain length determinant protein.
 
 
 0.979
THII_1539
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.884
THII_0800
Hypothetical protein.
 
     0.840
THII_1140
Glycosyltransferase.
  
  
 0.720
THII_3142
O-antigen polymerase.
 
  
 0.717
THII_3057
Mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.676
THII_0213
ABC transporter ATP-binding protein.
  
  
 0.639
THII_0715
Teichoic acids export ATP-binding protein TagH.
  
  
 0.639
THII_0192
ABC-type polysaccharide/polyol phosphate export system, permease component.
  
  
 0.608
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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