Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0856General secretion pathway protein G. (143 aa)    
Predicted Functional Partners:
THII_2843
General secretion pathway protein G.
  
  
 
0.912
THII_2700
Bacterial type II secretion system protein.
  
  
 
0.908
THII_3849
Type II secretion system protein.
  
 
  0.905
THII_0857
General secretion pathway protein H.
 
  
 0.849
THII_0854
General secretion pathway protein D.
 
  
 0.835
THII_0255
Type II secretory pathway, component PulK.
 
 
 0.825
THII_2261
General secretion pathway protein D.
 
  
 0.801
THII_0589
General secretion pathway protein D.
 
  
 0.794
THII_0858
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.773
THII_0859
Secreted protein.
  
 
 0.715
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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