STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_0872WD40 repeat-containing protein. (1206 aa)    
Predicted Functional Partners:
THII_0873
Extracellular ligand-binding receptor.
       0.778
THII_1822
WD repeat-containing protein.
  
     0.578
THII_0012
Polyketide synthase family protein.
 
 
   0.554
THII_0874
Hypothetical protein.
       0.539
THII_0964
TPR repeat containing protein.
 
  0.516
THII_2686
Hypothetical protein.
   
 0.509
THII_1006
Hypothetical protein.
  
  0.503
THII_0011
Hypothetical protein.
  
     0.497
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.495
THII_2996
WD repeat-containing protein.
  
 
 
0.486
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.