Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0889Hypothetical protein. (310 aa)    
Predicted Functional Partners:
THII_1846
Sodium/hydrogen exchanger family protein.
    
 0.916
THII_0888
Hypothetical protein.
       0.773
THII_0890
Hypothetical protein.
   
 0.762
THII_1693
Ankyrin.
  
 0.577
THII_3678
Ankyrin.
  
 0.577
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
   0.570
THII_0887
Hypothetical protein.
   
  0.561
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.491
THII_3046
ADP-ribosylation/crystallin J1.
   
 0.488
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.454
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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