Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_0911Hypothetical protein. (88 aa)    
Predicted Functional Partners:
THII_2333
Cytochrome c oxidase accessory protein FixG.
  
    0.705
THII_0338
Iron-sulfur cluster-binding protein.
   
    0.651
THII_0324
Cytochrome c, class II.
  
     0.550
THII_1618
Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
    0.524
THII_1756
Outer membrane protein W.
  
    0.500
THII_1617
Cytochrome c oxidase cbb3-type, subunit IV.
   
    0.443
THII_1166
Hypothetical protein.
  
     0.429
THII_0912
Hypothetical protein.
       0.417
THII_1615
Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
   
    0.411
THII_0816
Hypothetical protein; Belongs to the UPF0276 family.
  
     0.408
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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