Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_0913Formate hydrogenlyase. (226 aa)    
Predicted Functional Partners:
THII_0915
Ni,Fe-hydrogenase III large subunit.
 
  
 0.998
THII_0914
Oxidoreductase.
 
  
 0.973
THII_0841
Hydrogenase.
 
  
 0.932
THII_1549
Formate hydrogenlyase subunit 4.
 
  
 0.896
THII_1548
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit.
 
  
 0.884
THII_0916
Hypothetical protein.
       0.601
THII_0912
Hypothetical protein.
       0.419
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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