Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_1033Hypothetical protein. (1406 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.796
THII_3929
Type IV pilus assembly protein PilN.
  
  
 0.784
THII_3928
Type IV pilus assembly protein PilM.
  
  
 0.777
THII_3930
Type IV pilus assembly protein PilO.
  
  
 0.766
THII_2180
Tfp pilus assembly protein PilZ.
  
     0.762
THII_2427
Peptidoglycan-binding LysM.
  
     0.751
THII_2753
Histidine kinase.
  
 
   0.749
THII_3932
Type IV pilus assembly protein PilP.
  
  
 0.724
THII_0651
TonB family protein.
  
     0.708
THII_3931
Type IV pilus assembly protein PilP.
  
  
 0.703
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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