Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
THII_0323 | THII_0852 | Cytochrome c, class I. | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.989 |
THII_0323 | THII_0853 | Cytochrome c, class I. | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.994 |
THII_0323 | THII_1104 | Cytochrome c, class I. | Cytochrome P460. | 0.473 |
THII_0323 | THII_1615 | Cytochrome c, class I. | Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. | 0.412 |
THII_0323 | THII_1616 | Cytochrome c, class I. | Cytochrome c oxidase cbb3-type, subunit II. | 0.467 |
THII_0335 | THII_1104 | Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. | Cytochrome P460. | 0.479 |
THII_0335 | THII_1767 | Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. | Hypothetical protein. | 0.436 |
THII_0462 | THII_1104 | Transmembrane protein. | Cytochrome P460. | 0.451 |
THII_0852 | THII_0323 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c, class I. | 0.989 |
THII_0852 | THII_0853 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.999 |
THII_0852 | THII_1104 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome P460. | 0.659 |
THII_0852 | THII_1615 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. | 0.743 |
THII_0852 | THII_1616 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase cbb3-type, subunit II. | 0.594 |
THII_0852 | THII_1767 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Hypothetical protein. | 0.562 |
THII_0853 | THII_0323 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c, class I. | 0.994 |
THII_0853 | THII_0852 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.999 |
THII_0853 | THII_1104 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome P460. | 0.669 |
THII_0853 | THII_1615 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. | 0.712 |
THII_0853 | THII_1616 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase cbb3-type, subunit II. | 0.810 |
THII_0853 | THII_1767 | Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Hypothetical protein. | 0.420 |
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