THII_1149 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_1149

Hypothetical protein. (137 aa)

Predicted Functional Partners:

THII_1148

0.951

THII_1150

0.943

THII_1524

0.654

THII_1767

0.600

THII_0853

0.592

THII_0852

0.534

THII_1616

0.495

coq7

0.451

THII_0338

0.449

THII_0622

0.431

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_0338	THII_1149	THII_0338	THII_1149	Iron-sulfur cluster-binding protein.	Hypothetical protein.	0.449
THII_0338	THII_1616	THII_0338	THII_1616	Iron-sulfur cluster-binding protein.	Cytochrome c oxidase cbb3-type, subunit II.	0.796
THII_0338	THII_1767	THII_0338	THII_1767	Iron-sulfur cluster-binding protein.	Hypothetical protein.	0.772
THII_0622	THII_1149	THII_0622	THII_1149	Electron transport protein DsrP.	Hypothetical protein.	0.431
THII_0852	THII_0853	THII_0852	THII_0853	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0852	THII_1149	THII_0852	THII_1149	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.534
THII_0852	THII_1524	THII_0852	THII_1524	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADP oxidoreductase.	0.957
THII_0852	THII_1616	THII_0852	THII_1616	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit II.	0.881
THII_0852	THII_1767	THII_0852	THII_1767	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.666
THII_0853	THII_0852	THII_0853	THII_0852	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0853	THII_1149	THII_0853	THII_1149	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.592
THII_0853	THII_1524	THII_0853	THII_1524	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADP oxidoreductase.	0.996
THII_0853	THII_1616	THII_0853	THII_1616	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit II.	0.961
THII_0853	THII_1767	THII_0853	THII_1767	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein.	0.662
THII_1148	THII_1149	THII_1148	THII_1149	Diheme cytochrome c.	Hypothetical protein.	0.951
THII_1148	THII_1150	THII_1148	THII_1150	Diheme cytochrome c.	Cytochrome b.	0.800
THII_1148	THII_1767	THII_1148	THII_1767	Diheme cytochrome c.	Hypothetical protein.	0.445
THII_1148	coq7	THII_1148	THII_2184	Diheme cytochrome c.	Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	0.402
THII_1149	THII_0338	THII_1149	THII_0338	Hypothetical protein.	Iron-sulfur cluster-binding protein.	0.449
THII_1149	THII_0622	THII_1149	THII_0622	Hypothetical protein.	Electron transport protein DsrP.	0.431