STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_1168TonB-dependent outer membrane receptor. (665 aa)    
Predicted Functional Partners:
THII_1167
Regulatory lipoprotein.
 
     0.861
THII_1165
Biopolymer transporter ExbB.
 
   
 0.815
THII_1164
Biopolymer transport protein.
 
   
 0.804
THII_1166
Hypothetical protein.
       0.746
THII_2092
TonB protein.
 
 
 
 0.625
THII_1162
TonB family protein.
 
 
 
 0.616
THII_3027
Molybdenum-pterin binding domain protein.
 
   
 0.569
tolB
Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 
 0.463
THII_3532
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
  
 0.461
THII_0097
NHL repeat containing protein.
   
 
 0.452
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.