Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| THII_0767 | THII_1255 | THII_0767 | THII_1255 | Putative permease. | ABC transporter ATP-binding protein. | 0.997 |
| THII_0767 | THII_1257 | THII_0767 | THII_1257 | Putative permease. | Hypothetical protein. | 0.986 |
| THII_0767 | lptA | THII_0767 | THII_1256 | Putative permease. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.592 |
| THII_0767 | lptD | THII_0767 | THII_3161 | Putative permease. | Organic solvent tolerance protein OstA; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.726 |
| THII_1253 | THII_1254 | THII_1253 | THII_1254 | Ribosomal subunit interface protein. | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.757 |
| THII_1253 | THII_1255 | THII_1253 | THII_1255 | Ribosomal subunit interface protein. | ABC transporter ATP-binding protein. | 0.599 |
| THII_1253 | THII_1257 | THII_1253 | THII_1257 | Ribosomal subunit interface protein. | Hypothetical protein. | 0.515 |
| THII_1253 | THII_1258 | THII_1253 | THII_1258 | Ribosomal subunit interface protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.473 |
| THII_1253 | THII_1259 | THII_1253 | THII_1259 | Ribosomal subunit interface protein. | Polysialic acid capsule expression protein. | 0.562 |
| THII_1253 | lptA | THII_1253 | THII_1256 | Ribosomal subunit interface protein. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.552 |
| THII_1254 | THII_1253 | THII_1254 | THII_1253 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosomal subunit interface protein. | 0.757 |
| THII_1254 | THII_1255 | THII_1254 | THII_1255 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ABC transporter ATP-binding protein. | 0.742 |
| THII_1254 | THII_1257 | THII_1254 | THII_1257 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein. | 0.690 |
| THII_1254 | THII_1258 | THII_1254 | THII_1258 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.573 |
| THII_1254 | THII_1259 | THII_1254 | THII_1259 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Polysialic acid capsule expression protein. | 0.636 |
| THII_1254 | lptA | THII_1254 | THII_1256 | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.749 |
| THII_1255 | THII_0767 | THII_1255 | THII_0767 | ABC transporter ATP-binding protein. | Putative permease. | 0.997 |
| THII_1255 | THII_1253 | THII_1255 | THII_1253 | ABC transporter ATP-binding protein. | Ribosomal subunit interface protein. | 0.599 |
| THII_1255 | THII_1254 | THII_1255 | THII_1254 | ABC transporter ATP-binding protein. | DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.742 |
| THII_1255 | THII_1257 | THII_1255 | THII_1257 | ABC transporter ATP-binding protein. | Hypothetical protein. | 0.999 |
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