Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1266Fe-S oxidoreductase. (363 aa)    
Predicted Functional Partners:
THII_1265
Methylase.
 
     0.840
THII_2880
Heme biosynthesis protein.
 
  
 0.572
THII_2881
AsnC family transcriptional regulator.
 
  
 0.568
THII_3502
Hypothetical protein.
  
     0.545
THII_0276
Clostripain.
  
     0.517
THII_2879
Protein nirL.
 
  
 0.511
THII_0535
Sigma-70 region 4 domain-containing protein.
  
     0.505
THII_2878
Transcriptional regulator.
 
  
 0.505
THII_2877
Cytochrome d1 heme subunit.
 
  
 0.487
THII_2876
C-type cytochrome c55x.
 
    0.478
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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