Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_1279Hypothetical protein. (329 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.773
THII_1033
Hypothetical protein.
  
     0.695
THII_2999
Cell division protein.
  
    0.576
THII_1280
Hypothetical protein.
       0.505
THII_1307
DNA polymerase III chi subunit, HolC.
  
     0.503
nudJ
ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
  
 0.482
THII_1816
Sigma factor RpoE regulatory protein RseC.
  
     0.481
THII_0092
Hypothetical protein.
  
     0.480
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.415
THII_0198
Flagellar biosynthesis protein FlhF.
  
     0.410
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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