Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1392ABC transporter permease. (350 aa)    
Predicted Functional Partners:
THII_1393
Peptide ABC transporter permease.
  
 0.979
THII_1390
Peptide ABC transporter substrate-binding protein.
  
 0.978
THII_3910
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.901
THII_0681
Binding-protein-dependent transporters inner membrane component.
     0.812
THII_1391
Hypothetical protein.
       0.734
THII_1389
Hypothetical protein.
       0.657
THII_2692
Peptide ABC transporter substrate-binding protein.
   
 0.460
THII_1394
Formylmethanofuran dehydrogenase subunit B.
       0.408
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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