Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1414Hypothetical protein. (944 aa)    
Predicted Functional Partners:
THII_1988
Chemotaxis protein histidine kinase-like protein.
 
  
 0.707
THII_2951
Hypothetical protein.
  
     0.679
THII_1283
Chemotaxis protein histidine kinase-like protein.
  
  
 0.666
THII_2427
Peptidoglycan-binding LysM.
  
  
 0.629
THII_1573
Two-component system sensor histidine kinase/response regulator.
  
     0.616
THII_0274
Two-component system sensor histidine kinase/response regulator.
  
     0.606
THII_0899
ATPase AAA.
  
     0.577
THII_1415
Hypothetical protein.
       0.570
THII_0276
Clostripain.
  
     0.560
THII_2835
Hypothetical protein.
  
     0.556
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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