THII_1426 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_1426

Hypothetical protein; Belongs to the UPF0434 family. (62 aa)

Predicted Functional Partners:

lpxK

0.818

THII_1428

0.801

THII_1425

0.712

THII_1429

0.594

kdsB

0.465

THII_2826

0.462

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_1425	THII_1426	THII_1425	THII_1426	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	Hypothetical protein; Belongs to the UPF0434 family.	0.712
THII_1425	THII_1428	THII_1425	THII_1428	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	Biopolymer transport protein ExbD/TolR family.	0.698
THII_1425	THII_1429	THII_1425	THII_1429	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	MotA/TolQ/ExbB proton channel family protein.	0.517
THII_1425	kdsB	THII_1425	THII_0605	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	Acylneuraminate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.	0.655
THII_1425	lpxK	THII_1425	THII_1427	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	tetraacyldisaccharide-1-P 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.712
THII_1426	THII_1425	THII_1426	THII_1425	Hypothetical protein; Belongs to the UPF0434 family.	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	0.712
THII_1426	THII_1428	THII_1426	THII_1428	Hypothetical protein; Belongs to the UPF0434 family.	Biopolymer transport protein ExbD/TolR family.	0.801
THII_1426	THII_1429	THII_1426	THII_1429	Hypothetical protein; Belongs to the UPF0434 family.	MotA/TolQ/ExbB proton channel family protein.	0.594
THII_1426	THII_2826	THII_1426	THII_2826	Hypothetical protein; Belongs to the UPF0434 family.	Generic methyl-transferase.	0.462
THII_1426	kdsB	THII_1426	THII_0605	Hypothetical protein; Belongs to the UPF0434 family.	Acylneuraminate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.	0.465
THII_1426	lpxK	THII_1426	THII_1427	Hypothetical protein; Belongs to the UPF0434 family.	tetraacyldisaccharide-1-P 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.818
THII_1428	THII_1425	THII_1428	THII_1425	Biopolymer transport protein ExbD/TolR family.	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	0.698
THII_1428	THII_1426	THII_1428	THII_1426	Biopolymer transport protein ExbD/TolR family.	Hypothetical protein; Belongs to the UPF0434 family.	0.801
THII_1428	THII_1429	THII_1428	THII_1429	Biopolymer transport protein ExbD/TolR family.	MotA/TolQ/ExbB proton channel family protein.	0.965
THII_1428	lpxK	THII_1428	THII_1427	Biopolymer transport protein ExbD/TolR family.	tetraacyldisaccharide-1-P 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.838
THII_1429	THII_1425	THII_1429	THII_1425	MotA/TolQ/ExbB proton channel family protein.	Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	0.517
THII_1429	THII_1426	THII_1429	THII_1426	MotA/TolQ/ExbB proton channel family protein.	Hypothetical protein; Belongs to the UPF0434 family.	0.594
THII_1429	THII_1428	THII_1429	THII_1428	MotA/TolQ/ExbB proton channel family protein.	Biopolymer transport protein ExbD/TolR family.	0.965
THII_1429	kdsB	THII_1429	THII_0605	MotA/TolQ/ExbB proton channel family protein.	Acylneuraminate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.	0.469
THII_1429	lpxK	THII_1429	THII_1427	MotA/TolQ/ExbB proton channel family protein.	tetraacyldisaccharide-1-P 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.770