Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1453TIM-barrel fold metal-dependent hydrolase. (361 aa)    
Predicted Functional Partners:
THII_1452
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
 
     0.772
THII_0225
Hypothetical protein.
  
     0.676
THII_3172
Hypothetical protein.
  
     0.646
THII_2759
Hypothetical protein.
  
     0.641
THII_1454
Multi-sensor signal transduction multi-kinase.
 
     0.619
THII_1050
Amino acid adenylation enzyme/thioester reductase family protein.
 
   
 0.528
THII_2782
Polyketide synthase.
  
     0.526
THII_2783
tubC protein.
 
   
 0.516
THII_3575
Hypothetical protein.
  
     0.501
THII_1455
Family 3 adenylate cyclase.
       0.495
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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