Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1464Hypothetical protein. (213 aa)    
Predicted Functional Partners:
THII_1774
Dynamin family protein.
 
     0.764
THII_1267
Chromosome partitioning ATPase.
  
     0.737
THII_0779
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
    0.732
THII_3174
Hypothetical protein.
  
     0.706
THII_2460
Hypothetical protein.
  
     0.697
THII_0901
RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.666
THII_2461
Hypothetical protein.
  
     0.639
THII_0900
Hypothetical protein.
 
     0.617
THII_3283
PDK repeat-containing protein.
  
     0.614
THII_1463
Small-conductance mechanosensitive channel.
       0.601
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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